PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004146.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 416aa    MW: 43499.8 Da    PI: 6.1731
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004146.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH57.22.9e-18226272455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn+ ErrRRdriN+++  L+el+P++      K +Ka+iL +A+eY+ksLq
  Do004146.1 226 VHNMSERRRRDRINEKMRALQELVPHC-----NKTDKASILDEAIEYLKSLQ 272
                 6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.01E-18217276No hitNo description
SuperFamilySSF474591.06E-21220287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.743222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-15226272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-22226281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-18228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MGIRNLGALG SKKWILAMDG GERPATSQKR PFHPDGELVE LLWQDGAVVA HSQAQRGFGG  60
GGGNTGASSV TGEPAAAWLP GTCGGGALGG DVYSQLWQSI AQADGRAGAG APARARPAAK  120
SGNSGAGSSR TAGEVGSSLC GSNLVAAALH LDDDIDDVAA LPPPPLDEPG AGAGASTSSG  180
WNGNALPKRS RDEFASRSED ADFDTIDETP ASRQPASKRR TRAAEVHNMS ERRRRDRINE  240
KMRALQELVP HCNKTDKASI LDEAIEYLKS LQMQVQIMWM STGMAPMMLP GAHQLMPPMG  300
MGLNSACMPP AAQFLSQMQR VPPFMSNPLT NQMPQISSAA TIAPNVTNQA QSNRMAQLRN  360
PFLHSNDAMT TPPQVPSLFS YGPQMAQENV IQELLAGTAA PALGAELPSS SDGTGT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217234KRRTRAAEVHNMSERRRR
2230235ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955437.10.0PREDICTED: transcription factor PIF4-like
TrEMBLK3ZTU80.0K3ZTU8_SETIT; Uncharacterized protein
STRINGSi030028m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.12e-33phytochrome interacting factor 3-like 5